Comparative genomics of Crohn's disease-associated adherent-invasive Escherichia coli.
Identifieur interne : 000F47 ( Main/Exploration ); précédent : 000F46; suivant : 000F48Comparative genomics of Crohn's disease-associated adherent-invasive Escherichia coli.
Auteurs : Claire L. O'Brien [Australie] ; Marie-Agnès Bringer [France] ; Kathryn E. Holt [Australie] ; David M. Gordon [Australie] ; Anaëlle L. Dubois [France] ; Nicolas Barnich [France] ; Arlette Darfeuille-Michaud [France] ; Paul Pavli [Australie]Source :
- Gut [ 1468-3288 ] ; 2017.
Descripteurs français
- KwdFr :
- ADN bactérien (analyse), Adhérence bactérienne, Analyse de séquence d'ADN, Cellules épithéliales (microbiologie), Clustered regularly interspaced short palindromic repeats, Cytokines (sécrétion), Escherichia coli (croissance et développement), Escherichia coli (génétique), Facteur de nécrose tumorale alpha (sécrétion), Génome, Humains, Infections à Escherichia coli (), Interactions hôte-pathogène, Interleukine-10 (sécrétion), Interleukine-6 (sécrétion), Interleukine-8 (sécrétion), Lignée cellulaire, Macrophages (microbiologie), Macrophages (sécrétion), Maladie de Crohn (microbiologie), Phylogénie, Phénotype.
- MESH :
- analyse : ADN bactérien.
- croissance et développement : Escherichia coli.
- génétique : Escherichia coli.
- microbiologie : Cellules épithéliales, Macrophages, Maladie de Crohn.
- sécrétion : Cytokines, Facteur de nécrose tumorale alpha, Interleukine-10, Interleukine-6, Interleukine-8, Macrophages.
- Adhérence bactérienne, Analyse de séquence d'ADN, Clustered regularly interspaced short palindromic repeats, Génome, Humains, Infections à Escherichia coli, Interactions hôte-pathogène, Lignée cellulaire, Phylogénie, Phénotype.
English descriptors
- KwdEn :
- Bacterial Adhesion, Cell Line, Clustered Regularly Interspaced Short Palindromic Repeats, Crohn Disease (microbiology), Cytokines (secretion), DNA, Bacterial (analysis), Epithelial Cells (microbiology), Escherichia coli (genetics), Escherichia coli (growth & development), Escherichia coli Infections (complications), Genome, Host-Pathogen Interactions, Humans, Interleukin-10 (secretion), Interleukin-6 (secretion), Interleukin-8 (secretion), Macrophages (microbiology), Macrophages (secretion), Phenotype, Phylogeny, Sequence Analysis, DNA, Tumor Necrosis Factor-alpha (secretion).
- MESH :
- chemical , analysis : DNA, Bacterial.
- chemical , secretion : Cytokines, Interleukin-10, Interleukin-6, Interleukin-8, Tumor Necrosis Factor-alpha.
- complications : Escherichia coli Infections.
- genetics : Escherichia coli.
- growth & development : Escherichia coli.
- microbiology : Crohn Disease, Epithelial Cells, Macrophages.
- secretion : Macrophages.
- Bacterial Adhesion, Cell Line, Clustered Regularly Interspaced Short Palindromic Repeats, Genome, Host-Pathogen Interactions, Humans, Phenotype, Phylogeny, Sequence Analysis, DNA.
Abstract
Adherent-invasive Escherichia coli (AIEC) are a leading candidate bacterial trigger for Crohn's disease (CD). The AIEC pathovar is defined by in vitro cell-line assays examining specific bacteria/cell interactions. No molecular marker exists for their identification. Our aim was to identify a molecular property common to the AIEC phenotype.
DOI: 10.1136/gutjnl-2015-311059
PubMed: 27196580
Affiliations:
- Australie, France
- Auvergne (région administrative), Auvergne-Rhône-Alpes, Bourgogne, Bourgogne-Franche-Comté, Victoria (État)
- Clermont-Ferrand, Dijon, Melbourne
- Université de Melbourne
Links toward previous steps (curation, corpus...)
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- to stream PubMed, to step Checkpoint: 000851
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Le document en format XML
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O'Brien</name><affiliation wicri:level="1"><nlm:affiliation>Medical School, Australian National University, Canberra, Australian Capital Territory, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Medical School, Australian National University, Canberra, Australian Capital Territory</wicri:regionArea><wicri:noRegion>Australian Capital Territory</wicri:noRegion></affiliation></author><author><name sortKey="Bringer, Marie Agnes" sort="Bringer, Marie Agnes" uniqKey="Bringer M" first="Marie-Agnès" last="Bringer">Marie-Agnès Bringer</name><affiliation wicri:level="3"><nlm:affiliation>INRA UMR1324, CNRS UMR6265, Université Bourgogne-Franche-Comté, Centre des Sciences du Goût et de l'Alimentation, Dijon, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRA UMR1324, CNRS UMR6265, Université Bourgogne-Franche-Comté, Centre des Sciences du Goût et de l'Alimentation, Dijon</wicri:regionArea><placeName><region type="region">Bourgogne-Franche-Comté</region><region type="old region">Bourgogne</region><settlement type="city">Dijon</settlement></placeName></affiliation></author><author><name sortKey="Holt, Kathryn E" sort="Holt, Kathryn E" uniqKey="Holt K" first="Kathryn E" last="Holt">Kathryn E. 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Dubois</name><affiliation wicri:level="3"><nlm:affiliation>UMR1071 Inserm/University of Auvergne, INRA USC2018, M2iSH, Clermont-Ferrand, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR1071 Inserm/University of Auvergne, INRA USC2018, M2iSH, Clermont-Ferrand</wicri:regionArea><placeName><region type="region">Auvergne-Rhône-Alpes</region><region type="old region">Auvergne (région administrative)</region><settlement type="city">Clermont-Ferrand</settlement></placeName></affiliation></author><author><name sortKey="Barnich, Nicolas" sort="Barnich, Nicolas" uniqKey="Barnich N" first="Nicolas" last="Barnich">Nicolas Barnich</name><affiliation wicri:level="3"><nlm:affiliation>UMR1071 Inserm/University of Auvergne, INRA USC2018, M2iSH, Clermont-Ferrand, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR1071 Inserm/University of Auvergne, INRA USC2018, M2iSH, Clermont-Ferrand</wicri:regionArea><placeName><region 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last="Pavli">Paul Pavli</name><affiliation wicri:level="1"><nlm:affiliation>Medical School, Australian National University, Canberra, Australian Capital Territory, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Medical School, Australian National University, Canberra, Australian Capital Territory</wicri:regionArea><wicri:noRegion>Australian Capital Territory</wicri:noRegion></affiliation></author></analytic><series><title level="j">Gut</title><idno type="eISSN">1468-3288</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacterial Adhesion</term><term>Cell Line</term><term>Clustered Regularly Interspaced Short Palindromic Repeats</term><term>Crohn Disease (microbiology)</term><term>Cytokines (secretion)</term><term>DNA, Bacterial (analysis)</term><term>Epithelial Cells (microbiology)</term><term>Escherichia coli (genetics)</term><term>Escherichia coli (growth & development)</term><term>Escherichia coli Infections (complications)</term><term>Genome</term><term>Host-Pathogen Interactions</term><term>Humans</term><term>Interleukin-10 (secretion)</term><term>Interleukin-6 (secretion)</term><term>Interleukin-8 (secretion)</term><term>Macrophages (microbiology)</term><term>Macrophages (secretion)</term><term>Phenotype</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term><term>Tumor Necrosis Factor-alpha (secretion)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (analyse)</term><term>Adhérence bactérienne</term><term>Analyse de séquence d'ADN</term><term>Cellules épithéliales (microbiologie)</term><term>Clustered regularly interspaced short palindromic repeats</term><term>Cytokines (sécrétion)</term><term>Escherichia coli (croissance et développement)</term><term>Escherichia coli (génétique)</term><term>Facteur de nécrose tumorale alpha (sécrétion)</term><term>Génome</term><term>Humains</term><term>Infections à Escherichia coli ()</term><term>Interactions hôte-pathogène</term><term>Interleukine-10 (sécrétion)</term><term>Interleukine-6 (sécrétion)</term><term>Interleukine-8 (sécrétion)</term><term>Lignée cellulaire</term><term>Macrophages (microbiologie)</term><term>Macrophages (sécrétion)</term><term>Maladie de Crohn (microbiologie)</term><term>Phylogénie</term><term>Phénotype</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>DNA, Bacterial</term></keywords><keywords scheme="MESH" type="chemical" qualifier="secretion" xml:lang="en"><term>Cytokines</term><term>Interleukin-10</term><term>Interleukin-6</term><term>Interleukin-8</term><term>Tumor Necrosis Factor-alpha</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>ADN bactérien</term></keywords><keywords scheme="MESH" qualifier="complications" xml:lang="en"><term>Escherichia coli Infections</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Escherichia coli</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Escherichia coli</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Escherichia coli</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Escherichia coli</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Cellules épithéliales</term><term>Macrophages</term><term>Maladie de Crohn</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Crohn Disease</term><term>Epithelial Cells</term><term>Macrophages</term></keywords><keywords scheme="MESH" qualifier="secretion" xml:lang="en"><term>Macrophages</term></keywords><keywords scheme="MESH" qualifier="sécrétion" xml:lang="fr"><term>Cytokines</term><term>Facteur de nécrose tumorale alpha</term><term>Interleukine-10</term><term>Interleukine-6</term><term>Interleukine-8</term><term>Macrophages</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bacterial Adhesion</term><term>Cell Line</term><term>Clustered Regularly Interspaced Short Palindromic Repeats</term><term>Genome</term><term>Host-Pathogen Interactions</term><term>Humans</term><term>Phenotype</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Adhérence bactérienne</term><term>Analyse de séquence d'ADN</term><term>Clustered regularly interspaced short palindromic repeats</term><term>Génome</term><term>Humains</term><term>Infections à Escherichia coli</term><term>Interactions hôte-pathogène</term><term>Lignée cellulaire</term><term>Phylogénie</term><term>Phénotype</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Adherent-invasive Escherichia coli (AIEC) are a leading candidate bacterial trigger for Crohn's disease (CD). The AIEC pathovar is defined by in vitro cell-line assays examining specific bacteria/cell interactions. No molecular marker exists for their identification. Our aim was to identify a molecular property common to the AIEC phenotype.</div></front></TEI><affiliations><list><country><li>Australie</li><li>France</li></country><region><li>Auvergne (région administrative)</li><li>Auvergne-Rhône-Alpes</li><li>Bourgogne</li><li>Bourgogne-Franche-Comté</li><li>Victoria (État)</li></region><settlement><li>Clermont-Ferrand</li><li>Dijon</li><li>Melbourne</li></settlement><orgName><li>Université de Melbourne</li></orgName></list><tree><country name="Australie"><noRegion><name sortKey="O Brien, Claire L" sort="O Brien, Claire L" uniqKey="O Brien C" first="Claire L" last="O'Brien">Claire L. O'Brien</name></noRegion><name sortKey="Gordon, David M" sort="Gordon, David M" uniqKey="Gordon D" first="David M" last="Gordon">David M. Gordon</name><name sortKey="Holt, Kathryn E" sort="Holt, Kathryn E" uniqKey="Holt K" first="Kathryn E" last="Holt">Kathryn E. Holt</name><name sortKey="Pavli, Paul" sort="Pavli, Paul" uniqKey="Pavli P" first="Paul" last="Pavli">Paul Pavli</name></country><country name="France"><region name="Bourgogne-Franche-Comté"><name sortKey="Bringer, Marie Agnes" sort="Bringer, Marie Agnes" uniqKey="Bringer M" first="Marie-Agnès" last="Bringer">Marie-Agnès Bringer</name></region><name sortKey="Barnich, Nicolas" sort="Barnich, Nicolas" uniqKey="Barnich N" first="Nicolas" last="Barnich">Nicolas Barnich</name><name sortKey="Darfeuille Michaud, Arlette" sort="Darfeuille Michaud, Arlette" uniqKey="Darfeuille Michaud A" first="Arlette" last="Darfeuille-Michaud">Arlette Darfeuille-Michaud</name><name sortKey="Dubois, Anaelle L" sort="Dubois, Anaelle L" uniqKey="Dubois A" first="Anaëlle L" last="Dubois">Anaëlle L. 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